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    Home » Recipes » Dinner

    Pumpkin and Cheese Stuffed Shells

    Published: Oct 11, 2021 · Modified: Oct 8, 2023 by Krista Stechman · This post may contain affiliate links · Leave a Comment

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    pumpkin and cheese stuffed shells
    pumpkin and cheese shells

    I've always loved stuffed shells and these Pumpkin and Cheese Stuffed Shells are no exception. Delicious pumpkin mixed with creamy fontina, garlic and herbs then topped with a brown butter alfredo sauce...yes please!

    Have a pumpkin themed meal and make Pumpkin Creme Brulee for dinner!

    Pumpkin Cheese Stuffed Shells in a baking dish topped with fresh basil.

    They are so easy to make and pumpkin shells make the perfect holiday dish! Everyone will be begging for this new pumpkin recipe!

    If you love a good pumpkin and cheese combo then you'll adore this Pumpkin Cheesecake Cookie recipe. One of my fall favorites!

    Pumpkin Stuffed Shells are a dish the whole family can enjoy. My two year old ate these like they were going out of style and if you're kids are anything like mine this is AMAZING.

    Jump to:
    • Can you make pumpkin stuffed shells ahead of time?
    • Can you freeze Pumpkin and Cheese Stuffed Shells?
    • What kind of meat can I add to Pumpkin and Cheese Stuffed Shells?
    • What to serve with Pumpkin and Cheese Stuffed Shells
    • Ingredients for Pumpkin and Cheese Stuffed Shells
    • Tips for Pumpkin Stuffed Shells
    • How to brown butter
    • Pumpkin and Cheese Stuffed Shells

    Can you make pumpkin stuffed shells ahead of time?

    Yes, absolutely! Pumpkin and Cheese Stuffed Shells are a great meal because they're so easy to make in general but you can make it even easier for yourself by making the shells ahead of time. This can be done in a couple different ways.

    You can cook and stuff the shells then wrap them tightly and store them in the fridge for up to 2 days before cooking them. Simply take them out of the fridge, make the brown butter alfredo sauce, top the shells with the sauce then bake.

    You can also cook, stuff and sauce the shells ahead of time. Then you just remove the pan from the fridge and bake them according to directions.

    The third way you could make the shells ahead of time is to fully make and bake them. Then you can cool them down, wrap them tightly and store in the fridge for up to 3 days before reheating in the oven.

    shells prepped ahead of time ready for the fridge or the oven

    Can you freeze Pumpkin and Cheese Stuffed Shells?

    Yes, you can! I recommend cooking the shells, stuffing them, saucing them and then freezing them. Wrap them tightly 2-3 times then freeze for up to 2 months. I also recommend freezing them in an aluminum pan.

    They can be cooked straight from the freezer or you can thaw them first. Either way works fine. If you thaw them first then bake them unwrapped for the same amount of time as stated in the directions. If you're cooking them from frozen add an additional 15 minutes onto the cooking time and cook them covered with foil.

    close up of the shells filled with pumpkin and cheese

    What kind of meat can I add to Pumpkin and Cheese Stuffed Shells?

    If you like to eat meat with your pasta there are a couple options that work well with these stuffed shells. Here are a couple of my recommendations:

    • Spicy Sausage
    • Crispy Prosciutto
    • Pancetta
    shells melted with cheese on top

    What to serve with Pumpkin and Cheese Stuffed Shells

    • Roasted Cauliflower
    • Roasted Brussel Sprouts
    • Salad
    • Roasted Broccoli
    • Roasted Garlic Green Beans
    a shell on a spoon

    Ingredients for Pumpkin and Cheese Stuffed Shells

    • Pumpkin Puree - I use store bought canned pumpkin for this but if you make your own pumpkin puree that would work great as well! Libby's pumpkin puree is my go-to for pumpkin recipes, including pumpkin pie with graham cracker crust!
    • Fontina Cheese - Fontina is super creamy, melts well and so delicious. Perfect for pumpkin stuffed shells!
    • Mozzarella Cheese - Great for melting and extra cheesiness!
    • Fresh Garlic - I almost always use fresh garlic over garlic powder. You can never have enough garlic!
    • Fresh Basil - Fresh herbs really add amazing flavor to any dish. I love adding fresh basil to any of my stuffed shells recipes.
    • Kosher Salt - Salt really enhance the flavor of any dish you're making, sweet or savory.
    • Black Pepper - I prefer the course ground black pepper to get a bolder flavor.
    • Crushed Red Pepper - I love spice in everything! Feel free to leave this out or lessen the amount if you're not a big fan of spice.
    • Jumbo Shells - You can find these in the pasta section at most local grocers. This is what you're looking for.
    • Olive Oil - Just a splash for the pasta water to help the shells not stick together.
    • Unsalted Butter - I use unsalted so I can control the salt level by adding it myself.
    • Fresh thyme - Fresh is really preferred here but if you're in a pinch dried thyme would work just fine.
    • All Purpose Flour - This is going to help thicken the alfredo sauce for the stuffed shells.
    • Whole Milk - Alfredo is a milk based sauce.
    • Heavy Cream - This will help add some body and creaminess to the alfredo sauce.
    • Parmesan Cheese - You can't have alfredo without Parmesan cheese. Parmesan compliments the pumpkin stuffed shells perfectly.
    • Nutmeg - I always like to add nutmeg to my milk/cream based sauces. Nutmeg and pumpkin go hand in hand.
    • Chicken Base - THIS IS COMPLETELY OPTIONAL. I like to put just a splash of chicken base into my alfredo sauce. Definitely not necessary though. This is the chicken base I'm obsessed with.
    ingredients for alfredo sauce
    pumpkin cheese filling ingredients in a white bowl

    Tips for Pumpkin Stuffed Shells

    • Use a food processor to shred the fontina and mozzarella. It's much quicker
    • Make sure to only cook the shells to "al dente" according to the package directions. If you over cook them they will be mush and fall apart
    • Make the shells ahead! If you're taking them to a holiday, party or just having them for dinner at home they can be prepared ahead and refrigerated until you're ready to cook them
    • If you like meat in your stuffed shells then add a little spicy sausage, pancetta or prosciutto
    • Let your roux cook for 2-3 minutes on low while stirring occasionally to cook out the flour taste
    • Be careful not to brown your roux. It will give the sauce a nutty flavor
    • Roux is a mixture of flour and fat, in this case butter and flour
    stuffed shells in a ceramic baking dish

    How to brown butter

    Brown butter is one of my all time favorite flavors. I use it a lot in baking but it can be used in savory dishes as well. It is very simple to make and it compliments the pumpkin shells well.

    Start melting your butter in a heavy bottomed sauce pan over medium - low heat. Once the butter is fully melted let it continue to cook over low- medium heat. The butter will pop and crackle while cooking, this is normal just give it a stir every once in awhile.

    You will start to see the butter browning a little at a time. Make sure to stir it around and stir up all the brown bits from the bottom. Basically once your butter stops crackling then it's ready.

    brown butter in a Dutch oven

    The butter will be a nice golden brown color. At this point you can turn the heat to low, add the garlic then continue on making the brown butter alfredo sauce.

    brown butter with minced garlic

    If you make my Pumpkin and Cheese Stuffed Shells please leave me a rating and/or a review!

    If you want all the newest recipes sent straight to your inbox then don't forget to sign up for my newsletter! I would absolutely love you to leave me a rating or review at the bottom of this post if you make this recipe! I love hearing feedback from everyone. Please tag me in any Instagram photos if you make my recipes, I love to see what you're cooking! https://www.instagram.com/inkristaskitchen/

    pumpkin and cheese stuffed shells after being baked
    Pumpkin Cheese Stuffed Shells in a baking dish topped with fresh basil.

    Pumpkin and Cheese Stuffed Shells

    Krista Stechman
    Creamy pumpkin and cheese filled shells topped with brown butter alfredo sauce
    5 from 1 vote
    Print Recipe Pin Recipe
    Prep Time 10 minutes mins
    Cook Time 40 minutes mins
    Total Time 50 minutes mins
    Course dinner
    Cuisine italian
    Servings 6 people
    Calories 585 kcal

    Equipment

    • food processor
    • stove top

    Ingredients
      

    Jumbo Shells

    • 20 pieces jumbo shells
    • 4 quarts water
    • 1 tablespoon kosher salt
    • 1 teaspoon olive oil

    Brown Butter Alfredo Sauce

    • ½ cup unsalted butter
    • 14 sprigs fresh thyme
    • 4 cloves garlic minced
    • ¼ cup all purpose flour
    • ½ cup heavy cream
    • 2.5 cups whole milk
    • 7 oz parmesan cheese shredded
    • ½ teaspoon kosher salt
    • 1/16 tsp nutmeg
    • 1 splash chicken base OPTIONAL

    Pumpkin and Cheese Filling

    • 15 oz pumpkin puree
    • 5 oz fontina shredded
    • ½ cup mozzarella shredded
    • 2 cloves garlic minced
    • ⅓ cup basil chiffonade
    • ¼ teaspoon kosher salt
    • ¼ teaspoon black pepper
    • ¼ tsp crushed red pepper

    Instructions
     

    Boil the Shells

    • Fill a pot with water, salt and oil then bring it to a boil. Add the shells and cook according to package directions
    • Drain the shells and rinse under cold water. Set aside

    Making the Brown Butter Alfredo Sauce

    • Brown the butter in a sauce pot. As soon as the butter is brown add the garlic and stir around for 15 seconds
      brown butter
    • Add the flour and whisk well. Let the flour cook for 2-3 minutes on low heat
    • Add the cream and whisk until there are no lumps. Add the milk, whisking until smooth
    • Stir in the parmesan cheese, salt and nutmeg. Add the chicken base if you are using it
      alfredo sauce
    • Whisk the sauce until the cheese has melted and you have a smooth consistency. Remove from the heat and set aside

    Mix the Pumpkin and Cheese Filling

    • Add all filling ingredients to a medium sized mixing bowl and mix until well combined
      pumpkin cheese filling mix

    Filling and Baking the Shells

    • Preheat the oven to 350°F and spray a baking dish with non stick cooking spray
    • Spread a small amount of sauce in the bottom of the baking dish
    • Fill each shell with approximately 1.5 tablespoon pumpkin cheese filling and place in the dish open side up
      stuffed shells ready for sauce and the oven
    • Once all shells are filled pour the sauce over the top of all the shells. Use a spoon to spread sauce out trying to cover the tops of all the shells
    • Bake for 30 minutes until shells are bubbly. Serve hot and enjoy!
      cooked shells with melted cheese

    Notes

    Shells can be boiled and kept in the fridge up to 24 hours ahead of time in an airtight container.
    Cook the shells slightly less done than al dente. They will continue cooking in the oven when warming the filling. 
    As soon as the filling in the center of a centrally located shell is hot, it is ready to go. You can check the temperature with a digital meat thermometer, when it reads 170°F, they are hot enough.

    Nutrition

    Calories: 585kcalCarbohydrates: 21gProtein: 26gFat: 45gSaturated Fat: 28gPolyunsaturated Fat: 2gMonounsaturated Fat: 13gTrans Fat: 1gCholesterol: 135mgSodium: 2361mgPotassium: 399mgFiber: 3gSugar: 8gVitamin A: 12703IUVitamin C: 8mgCalcium: 759mgIron: 2mg
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